# Supplementary materials

Generated from the committed analysis (`annotation/`); regenerate with `annotation/reproduce.sh`.

## Supplementary figures
- **Figure S1 — Sensitivity of the radiation gene-set test.** Power (α=0.05, two-sided) to detect a
  coordinated shift δ in the scent set's 40-vs-0 cGy dose effect, by shifting the stratified
  permutation null. The set-level test detects ~3–4% coordinated shifts at 80% power; the observed
  effects fall below, so the null is informative, not merely under-powered.
  File: `annotation/figures/FigS1_power.png` · source: `annotation/phase3_power.py`
  (numbers: `annotation/phase3_power_results.tsv`).

## Supplementary tables
- **Table S1 — Full floral-scent gene set (363 genes).** Every curated gene with its confidence
  tier, biosynthetic route(s), presence in each experiment, and GO/Pfam evidence.
  File: `annotation/tables/TableS1_scent_geneset_full.csv` · source: `annotation/scent_geneset.tsv`.
- **Table S2 — Cross-species ortholog matrix.** Ensembl Compara ortholog counts for the 12
  Arabidopsis-anchored scent genes across the plant panel (full version of Fig 4).
  File: `annotation/tables/TableS2_ortholog_matrix.csv` · source: `annotation/scent_orthology_matrix.tsv`.

## Main figures & tables
See [`results.html`](results.html) (rendered) and [`TABLES.md`](TABLES.md) (Tables 1–3);
CSVs in [`annotation/tables/`](https://github.com/dr-richard-barker/B_rappa_LLGCSS/tree/main/annotation/tables).