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      <qbo:mapNotes xmlns:qbo="https://dr-richard-barker.github.io/quantum-biology-atlas/qbo/1.0">TCA cycle and the Fe/S-dependent steps. The review's Figure 4 renders this as a linear chain from glucose to oxaloacetate with no OAA-to-citrate closure, which the draft's own margin note flags. The closure matters: it is what shows that the two Fe/S-dependent steps throttle flux around the whole loop instead of interrupting a line. Aconitase and succinate dehydrogenase are the review's sentinel nodes and are annotated once on QBM-01, referenced here rather than re-declared, so one entity cannot carry different evidence on two maps. The citrate-to-isocitrate ratio is the most direct available in-vivo proxy for Fe/S cluster integrity and is worth measuring in any near-null-field metabolomics experiment. Note that plant mitochondrial fumarase is a class-II enzyme with no Fe/S cluster, unlike the class-I bacterial form it is sometimes confused with. Derived from: Figure 4 of Porterfield &amp; Barker, "Plant Responses to Near-Null Magnetic Fields" — redrawn as a closed cycle, expanded to gene level and bound to Arabidopsis loci</qbo:mapNotes>
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        <label text="4Fe-4S sentinel" />
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      <extension>
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          <qbo:quantumClass>iron_sulfur_4Fe4S</qbo:quantumClass>
          <qbo:nucleus>57Fe</qbo:nucleus>
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          <qbo:rationale>The review nominates aconitase as the sentinel of Fe/S integrity, and the biochemistry supports it: the exposed cluster iron makes aconitase the first TCA activity to fall under oxidative stress, so it reports cluster damage before anything else does.
</qbo:rationale>
          <qbo:caveat>Precisely because aconitase responds to any oxidative insult, a change under NNMF would NOT by itself implicate a magnetic mechanism. It is a sensitive readout and a poor discriminator; it needs a paired ROS-independent control.
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        <label text="cit/isocit = Fe/S proxy" />
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        <label text="radical SAM" />
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          <qbo:rationale>A radical-SAM enzyme generating a 5'-deoxyadenosyl radical from a [4Fe-4S] cluster — genuine organic radical chemistry on an iron-sulfur centre, which is the tightest coupling of the review's two proposed mechanisms found anywhere in primary metabolism. Its product lipoylates pyruvate dehydrogenase and the 2-oxoglutarate dehydrogenase complex, so a defect propagates straight into TCA flux.
</qbo:rationale>
          <qbo:caveat>The radical is generated inside the active site and quenched within one turnover; whether a spin-correlated pair with a long enough lifetime to be field-sensitive ever forms is untested.
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          <qbo:rationale>Carries all three cluster types plus a covalent flavin, and sits at the junction the review nominates as the bottleneck — a change here propagates into both TCA flux and respiratory electron flow.
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        <label text="signal amplifier" />
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          <qbo:evidence ref="Parmagnani2022" doi="10.3390/biom12121824" direction="altered" fieldRegime="NNMF">Near-null magnetic field exposure alters ROS-associated transcriptomic and metabolomic programmes in Arabidopsis.
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          <qbo:evidence ref="Farooq2021" doi="10.3389/fpls.2021.781734" direction="altered">Reactive oxygen species and mitochondria jointly regulate seed germination, establishing the route from mitochondrial ROS to a developmental outcome.
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          <qbo:rationale>Not a magnetosensitive mechanism itself — it is the amplifier. A field effect too small to measure as a rate change can still register here, because ROS signalling is threshold-like.
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