{
  "key": "Mannino2026",
  "citation": "Mannino, Caldo & Maffei (2026), Journal of Plant Physiology 326:154872",
  "doi": "10.1016/j.jplph.2026.154872",
  "pmcid": "DOI:10.1016/j.jplph.2026.154872",
  "provenance_class": "published_results",
  "data_availability_verbatim": "Data will be made available on request",
  "organism": "Ocimum basilicum",
  "field_regime": "near-null magnetic field (<40 nT) against the local geomagnetic field (~44.4 \u00b5T), generated in a triaxial Helmholtz coil system and monitored with a three-axis Bartington Mag-03 magnetometer",
  "source_table": "gene_expression.tsv",
  "loci_in_table": 21,
  "qbo_loci_covered": [
    "AT1G07890",
    "AT1G08830",
    "AT1G20630",
    "AT4G25100"
  ],
  "cells_parsed": 21,
  "cells_blank": 0,
  "rows_without_locus": 0,
  "tissues": [
    "leaves"
  ],
  "figures": [
    {
      "id": "QBM-07",
      "study": "Mannino, Caldo & Maffei",
      "tissue": "leaves",
      "organism": "Ocimum basilicum",
      "svg": "maps/svg/QBM-07__Mannino-Caldo-Maffei__leaves.svg",
      "timepoints": [
        "4w"
      ],
      "nodes_with_data": 4,
      "fraction_covered": 0.5,
      "vmax": 1.45,
      "nodes_reversing_direction": [],
      "nodes_with_heatmap": [
        "SUPEROXIDE_DISMUTASES"
      ],
      "nodes_with_diverging_loci": [
        "SUPEROXIDE_DISMUTASES"
      ],
      "provenance": "Values are the authors' published results from Mannino, Caldo & Maffei (2026), Journal of Plant Physiology 326:154872 (doi:10.1016/j.jplph.2026.154872), not a reanalysis: hMF-grown plants relative to GMF controls after 4 weeks exposure. No raw data was deposited \u2014 the Data Availability Statement reads \u201cData will be made available on request\u201d. Reported as log2 fold change; values are published directly as log2 fold change (hMF/GMF) \u00b1 SD from qRT-PCR; no conversion needed. leaves, 1 timepoints (4w). 4 of 8 identifier-bearing nodes received a series (50%); 4 nodes carry no gene identifier and cannot. multi-locus nodes aggregated by extreme at each timepoint. 1 node(s) have loci that disagree in direction at the same timepoint (SUPEROXIDE_DISMUTASES), so their single trace is the aggregator choosing between genes that are doing different things \u2014 read those per locus, not as a node.",
      "dropped_edge_labels": [],
      "low_coverage_published": false,
      "per_node": [
        {
          "node_id": "PLASTID_ROS",
          "qbo": "QBO:PLASTID_ROS",
          "loci": [
            "AT4G25100"
          ],
          "timepoints": [
            "4w"
          ],
          "log2": [
            1.15
          ],
          "sd": [
            0.12
          ],
          "peak": 1.15,
          "peak_timepoint": "4w",
          "reverses_direction": false,
          "evidence_tier": "T2",
          "per_locus": {
            "AT4G25100": [
              1.15
            ]
          },
          "loci_diverge": false
        },
        {
          "node_id": "SUPEROXIDE_DISMUTASES",
          "qbo": "QBO:SUPEROXIDE_DISMUTASES",
          "loci": [
            "AT1G08830",
            "AT4G25100"
          ],
          "timepoints": [
            "4w"
          ],
          "log2": [
            -1.45
          ],
          "sd": [
            0.15
          ],
          "peak": -1.45,
          "peak_timepoint": "4w",
          "reverses_direction": false,
          "evidence_tier": "T4",
          "per_locus": {
            "AT1G08830": [
              -1.45
            ],
            "AT4G25100": [
              1.15
            ]
          },
          "loci_diverge": true
        },
        {
          "node_id": "ASCORBATE_PEROXIDASE",
          "qbo": "QBO:ASCORBATE_PEROXIDASE",
          "loci": [
            "AT1G07890"
          ],
          "timepoints": [
            "4w"
          ],
          "log2": [
            0.12
          ],
          "sd": [
            0.08
          ],
          "peak": 0.12,
          "peak_timepoint": "4w",
          "reverses_direction": false,
          "evidence_tier": "T3",
          "per_locus": {
            "AT1G07890": [
              0.12
            ]
          },
          "loci_diverge": false
        },
        {
          "node_id": "CATALASE",
          "qbo": "QBO:CATALASE",
          "loci": [
            "AT1G20630"
          ],
          "timepoints": [
            "4w"
          ],
          "log2": [
            -0.68
          ],
          "sd": [
            0.1
          ],
          "peak": -0.68,
          "peak_timepoint": "4w",
          "reverses_direction": false,
          "evidence_tier": "T3",
          "per_locus": {
            "AT1G20630": [
              -0.68
            ]
          },
          "loci_diverge": false
        }
      ]
    }
  ],
  "submap_svg": "maps/svg/submap__phenylpropanoid_volatilome__Mannino2026.svg"
}