COSE · AstroBotany · in-silico tropisms

🌱 Seed Germination Simulator v3

Model version: v1 (original) v2 (calibrated) v3 (gradient) v4 (EMF)

Upgrades the calibrated v2 model to support osmotic solute gradients, an evaporative agar drying model (driven by wind speed & temperature), toggleable square petri dishes, and interactive seed drag-and-drop sowing. Watch roots steer away from dry or saline zones (hydrotropism) and clamp/run along the dish borders.

▶ Start simulation 🗺 Morphology atlas ⇄ v1 vs v2 vs real Code & model (GitHub)
Day 0.0 / 14 Time 06:00 ☀︎ Seeds 8 Avg primary root 0 u Laterals 0 Light 100% Gravity 1.0 g
D2LR 0 /u Tortuosity 1.00 Mean lateral angle –° Contacts 0

Simulation

4×
14 d
8
±60°

Micropyle = spread of initial root-exit angles across the seeds. Each seed's coat now visually rotates to face its own micropyle direction — seeds aren't perfectly round, so the coat shape should reflect which way the radicle will emerge.

Gravity

1.0g
90°

Gravitropic gain now follows the real saturating asymmetry curve from the virtual-root auxin model (µG→Moon→Mars→Earth→2g = 0/10/21/36/41% lower-side asymmetry), not a linear ramp — response is much weaker below 1g than v1 implied. Directional noise also increases as gravity→0 (OSD-121: root-angle dispersion 51.2° flight vs 45.3° ground).

Light

100%
270°
fff

Colour is visual only — this model responds to light intensity & direction, not wavelength.

Root interaction

40%

When two roots touch: 0% = always grow over/through each other (v1 behaviour); 100% = always deflect off each other; in between (e.g. 40% ≈ "4:6", 30% ≈ "3:7") some contacts pass through and some bounce, matching the mixed behaviour real crowded roots show.

Adds a burst of extra directional variance right at the moment two roots touch, on top of whatever the bounce/grow-over outcome was — models the unpredictable local response real roots show to mechanical/chemical contact, beyond simple deflection.

Osmotic Gradient

50%
80%
3.0 m/s
25°C

Steer roots away from solute gradients (hydrotropism) and slow growth in dry agar. Wind & temp drive drying speed from the rim inward.

Display & data

Time series

Avg primary root length (u) Light intensity (%) Gravity (g ×10) Tortuosity (×50)