Plant Systems Biology & Omics Projection
Plant Pathway Atlas
Uniting MapMan4 functional BINs, PlantCyc metabolic flows, and ggPlant spatial polygons under the measured-text deterministic layout and cross-species orthology architecture pioneered in the Quantum Biology Atlas.
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Pathway Interconnectivity & Overview Matrix
Curated cross-talk between metabolic flux, bioenergetics, signaling cascades, and solute allocation:
| ID | Pathway Title | Primary Compartment | Nodes | Curated Loci | Key Enzymes / Genes | Action |
|---|
FAIR Principles & Standard Compliance
- Findable: Registered in Zenodo (.zenodo.json) with permanent metadata and machine-readable CITATION.cff.
- Accessible: Dual licensed (MIT for software, CC-BY-4.0 for data and maps); open standard formats (SVG, SBGN-ML PD, JSON).
- Interoperable: Systems Biology Graphical Notation (SBGN-ML libsbgn 0.3) compliant with MapMan/PlantCyc annotations; validated against JSON Schema.
- Reusable: Complete MANIFEST.tsv and cryptographic CHECKSUMS.sha256; automated ABAI Quality Control (QC) screening (.abai/attest.json).