Cross-Species Orthology Matrix
Precomputed, evidence-corroborated ortholog mappings connecting 358 Arabidopsis thaliana loci to major crop species and comparative models. Powers zero-reannotation omics projection in the browser.
Why is this Matrix Included & How Does It Work?
Plant molecular genetics is deeply anchored in Arabidopsis thaliana. However, agricultural scientists, space biologists, and crop breeders work with diverse target species like rice, maize, tomato, and soybean. The Orthology Matrix acts as a universal genomic translator that bridges this gap.
🌱 Zero-Reannotation Projection
Instead of manually BLASTing hundreds of genes, researchers upload their native crop RNA-seq or proteomics table
(e.g., LOC_Os... for rice or Zm00001d... for maize) directly into
Explore Your Data.
The projection engine translates identifiers on the fly and renders fold-changes onto the diagrams!
🔬 Evidence Corroboration
Each mapping is evaluated across Ensembl Pan-Compara, OrthoDB v11, and curated reciprocal best-hit seed sets. We distinguish high-confidence 1:1 unambiguous orthologs from 1:many paralogous expansions.
📊 Open Data Export
You can inspect individual gene mappings in the interactive table below, filter by relationship type, or export the entire species translation table as CSV/TSV for use in R (DESeq2/EdgeR) or Python scripts.
| Arabidopsis Locus | Target Species Ortholog(s) | Homology Type | Evidence Methods | Corroboration |
|---|---|---|---|---|
| Loading orthology matrix... | ||||
Download Matrix & Export Data
Export the selected species translation dictionary or download the complete 9-species raw JSON matrix: