Open access datasets, predictions, knowledge graph tables, and conda/Docker environments.
🚀 AstroBotany Hub| Table Name | Category | Description | Rows | File Link |
|---|---|---|---|---|
top10_predicted_ecotypes.csv |
Prioritized Ecotypes | Top 10 accessions with ABRC stock IDs, coordinates, elevation, chromosome-4 alternate homozygous SNP count, and predicted score. | 10 | Download CSV |
top10_phenotypic_profiles.csv |
Prioritized Ecotypes & Phenotypes | Top 10 accessions with flowering times from AraPheno (1001 Genomes FT10/FT16) where available. | 10 | Download CSV |
top10_flowering_times.csv |
Prioritized Ecotypes | FT10 and FT16 flowering times (days) for the top 10 accessions from AraPheno phenotypes 261 and 262 (code/32). |
10 | Download CSV |
ecotype_prediction_geo.csv |
Geographic & Ecotype | 982 accessions with coordinates, Open-Meteo elevation, predicted response scores, and tiers. | 982 | Download CSV |
power_analysis_results.csv |
Power & Limitations (Q4) | Statistical power calculations across sample sizes (n=4 to n=982) and effect sizes, plus the power at the observed latitude correlation. | 22 | Download CSV |
gwas_de_overlap_genes.csv |
GWAS & Transcriptomics | 763 GWAS candidate genes overlapping spaceflight DEGs with meta-analysis metrics. | 763 | Download CSV |
meta_analysis_consensus_genes.csv |
Meta-Analysis | 2,550 consensus significant spaceflight DEGs (1,291 upregulated, 1,259 downregulated). | 2,550 | Download CSV |
photorespiration_de_genes.csv |
Pathway Specific | The 53 differentially expressed photorespiration genes (of 56 tested). | 53 | Download CSV |
ion_content_locus_sharing.csv |
Chr4 Locus | How many of the 31 scoring SNP positions each of six AraGWAS traits shares: three ionome traits (Co59, As75, Mo98; none shared) and three LC-MS metabolite features (M216T665, M172T666, M130T666). | 6 | Download CSV |
ionome_enrichment.csv |
Ionome Enrichment | Per-trait and pooled enrichment of six ICP-MS ionome traits among spaceflight DEGs, with the metabolite features and At2 shown separately (code/30). |
11 | Download CSV |
chr4_window_associations.csv |
Chr4 Locus | Every AraGWAS association (−log10 p ≥ 4) at chr4:1.20–1.32 Mb for the metabolite-feature and Co/Mo/As studies (code/31). |
3,916 | Download CSV |
chr4_window_genes.csv |
Chr4 Locus | Genes in chr4:1.20–1.32 Mb with AraGWAS gene-database descriptions (code/31). |
37 | Download CSV |
kg_nodes.csv |
Knowledge Graph | 24,565 nodes (Genes, GO terms, Pathways, Traits, Ecotypes, Subcellular locations). | 24,565 | Download CSV |
kg_edges.csv |
Knowledge Graph | 92,904 typed edges interconnecting knowledge graph entities. | 92,904 | Download CSV |